Fix early load perms patch (Fixes #5917)

patches/server/Default-loading-permissions.yml-before-plugins.patch

@@ -34,13 +34,13 @@ index 0000000000000000000000000000000000000000..00000000000000000000000000000000
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 @@ -0,0 +0,0 @@ public final class CraftServer implements Server {
- 
+         if (type == PluginLoadOrder.STARTUP) {
-         if (!Main.useConsole) {
+             this.helpMap.clear();
-             this.getLogger().info("Console input is disabled due to --noconsole command argument");
+             this.helpMap.initializeGeneralTopics();
 +            if (com.destroystokyo.paper.PaperConfig.loadPermsBeforePlugins) loadCustomPermissions(); // Paper
          }
  
-         this.configuration = YamlConfiguration.loadConfiguration(this.getConfigFile());
+         Plugin[] plugins = this.pluginManager.getPlugins();
 @@ -0,0 +0,0 @@ public final class CraftServer implements Server {
              this.commandMap.registerServerAliases();
              DefaultPermissions.registerCorePermissions();