Added ">" to input command line, separated it from output buffer properly

src/main/java/net/minecraft/server/ThreadCommandReader.java

@@ -3,6 +3,7 @@ package net.minecraft.server;
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStreamReader;
+import java.io.PrintStream;
 import java.util.logging.Level;
 import java.util.logging.Logger;
 import jline.ConsoleReader;
@@ -21,11 +22,9 @@ public class ThreadCommandReader extends Thread {
         try {
             ConsoleReader reader = a.reader;
             String line = null;
-
-            while ((!this.a.g) && (MinecraftServer.a(this.a)) && ((line = reader.readLine()) != null)) {
+            while ((!this.a.g) && (MinecraftServer.a(this.a)) && ((line = reader.readLine(">", null)) != null)) {
                 this.a.a(line, (ICommandListener) this.a);
             }
-
         } catch (IOException ex) {
             Logger.getLogger(ThreadCommandReader.class.getName()).log(Level.SEVERE, null, ex);
         }

src/main/java/org/bukkit/craftbukkit/util/TerminalConsoleHandler.java

@@ -16,12 +16,14 @@ public class TerminalConsoleHandler extends ConsoleHandler {
 
     @Override
     public synchronized void flush() {
-        super.flush();
         try {
-            reader.redrawLine();
+            reader.printString(ConsoleReader.RESET_LINE + "");
+            reader.flushConsole();
+            super.flush();
+            reader.drawLine();
+            reader.flushConsole();
         } catch (IOException ex) {
             Logger.getLogger(TerminalConsoleHandler.class.getName()).log(Level.SEVERE, null, ex);
         }
     }
-
 }