Fix early load perms patch (Fixes #5917)

patches/server/0059-Default-loading-permissions.yml-before-plugins.patch

@@ -30,17 +30,17 @@ index 429b74474ced04d8dd8f038b8590b8dfe178bf4d..716f285e67019b8a62922d09c15883c9
 +    }
  }
 diff --git a/src/main/java/org/bukkit/craftbukkit/CraftServer.java b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-index 2d84d6a18ef93f591d7eb3ef1bf80e88a1a096f5..6bf6183d318e277f0dd2d448edea73d90c42cfd3 100644
+index 43b0ecb3b1c06bbb3b7476c67b29e6deab424ac6..9ca44d8e2de750b821b0d760d49193e94001885a 100644
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-@@ -294,6 +294,7 @@ public final class CraftServer implements Server {
- 
-         if (!Main.useConsole) {
-             this.getLogger().info("Console input is disabled due to --noconsole command argument");
+@@ -400,6 +400,7 @@ public final class CraftServer implements Server {
+         if (type == PluginLoadOrder.STARTUP) {
+             this.helpMap.clear();
+             this.helpMap.initializeGeneralTopics();
 +            if (com.destroystokyo.paper.PaperConfig.loadPermsBeforePlugins) loadCustomPermissions(); // Paper
          }
  
-         this.configuration = YamlConfiguration.loadConfiguration(this.getConfigFile());
+         Plugin[] plugins = this.pluginManager.getPlugins();
 @@ -419,7 +420,7 @@ public final class CraftServer implements Server {
              this.commandMap.registerServerAliases();
              DefaultPermissions.registerCorePermissions();

patches/server/0455-Add-Plugin-Tickets-to-API-Chunk-Methods.patch

@@ -22,10 +22,10 @@ wants it to collect even faster, they can restore that setting back to 1 instead
 Not adding it to .getType() though to keep behavior consistent with vanilla for performance reasons.
 
 diff --git a/src/main/java/org/bukkit/craftbukkit/CraftServer.java b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-index 35339d49458aded3f80ff162b9725ceb84ae47c6..434a46dca55453815772eeb50ef412b02af2c0a1 100644
+index 89f9fc6ce6ba0d4bb6bb133d26bed6ec03a55694..30552c2dcb2b8e648ee6519478e830f3e86a10b9 100644
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-@@ -346,7 +346,7 @@ public final class CraftServer implements Server {
+@@ -345,7 +345,7 @@ public final class CraftServer implements Server {
          this.ambientSpawn = this.configuration.getInt("spawn-limits.ambient");
          console.autosavePeriod = this.configuration.getInt("ticks-per.autosave");
          this.warningState = WarningState.value(this.configuration.getString("settings.deprecated-verbose"));

patches/server/0681-Add-basic-Datapack-API.patch

@@ -92,7 +92,7 @@ index 0000000000000000000000000000000000000000..cf4374493c11057451a62a655514415c
 +    }
 +}
 diff --git a/src/main/java/org/bukkit/craftbukkit/CraftServer.java b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-index 273f80fc0325c2ccd2320e35ca36639f92345aea..8a90d38621a4877a798206fa8946fa60adf88e74 100644
+index 7cbb1b90ecf30091c5dc465bf33e599fa20ee5f5..0811c2804820b1dc0c49a354216b8d4eabc451c0 100644
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 @@ -266,6 +266,7 @@ public final class CraftServer implements Server {
@@ -103,7 +103,7 @@ index 273f80fc0325c2ccd2320e35ca36639f92345aea..8a90d38621a4877a798206fa8946fa60
      public static Exception excessiveVelEx; // Paper - Velocity warnings
  
      static {
-@@ -349,6 +350,7 @@ public final class CraftServer implements Server {
+@@ -348,6 +349,7 @@ public final class CraftServer implements Server {
          TicketType.PLUGIN.timeout = Math.min(20, this.configuration.getInt("chunk-gc.period-in-ticks")); // Paper - cap plugin loads to 1 second
          this.minimumAPI = this.configuration.getString("settings.minimum-api");
          this.loadIcon();

patches/server/0687-Add-command-line-option-to-load-extra-plugin-jars-no.patch

@@ -7,10 +7,10 @@ Subject: [PATCH] Add command line option to load extra plugin jars not in the
 ex: java -jar paperclip.jar nogui -add-plugin=/path/to/plugin.jar -add-plugin=/path/to/another/plugin_jar.jar
 
 diff --git a/src/main/java/org/bukkit/craftbukkit/CraftServer.java b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-index b7db2d68deeee0a213ee26e31475f05ba16d073e..ca28dda0f9819e8d75fbaa48cf5ff5643910999a 100644
+index 0811c2804820b1dc0c49a354216b8d4eabc451c0..0e11c5f2e11a0d75740c8810421bd935691f47b5 100644
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-@@ -386,8 +386,13 @@ public final class CraftServer implements Server {
+@@ -385,8 +385,13 @@ public final class CraftServer implements Server {
  
          File pluginFolder = (File) console.options.valueOf("plugins");
  
@@ -26,7 +26,7 @@ index b7db2d68deeee0a213ee26e31475f05ba16d073e..ca28dda0f9819e8d75fbaa48cf5ff564
              for (Plugin plugin : plugins) {
                  try {
                      String message = String.format("Loading %s", plugin.getDescription().getFullName());
-@@ -402,6 +407,18 @@ public final class CraftServer implements Server {
+@@ -401,6 +406,18 @@ public final class CraftServer implements Server {
          }
      }